Sugano SS, Nishihama R, Shirakawa M, Takagi J, Matsuda Y, Ishida S, Shimada T, Hara-Nishimura I, Osakabe K, Kohchi T.: Efficient CRISPR/Cas9-based genome editing and its application to conditional genetic analysis in Marchantia polymorpha. PLoS One. 13: e0205117 (2018).

Inoue S, Morita R, Kuwata K, Kunieda T, Ueda H, Hara-Nishimura I, Minami Y.: Tissue-specific and intracellular localization of indican synthase from Polygonum tinctorium. Plant Physiol Biochem. 132: 138-144 (2018).

Ishikawa K, Tamura K, Ueda H, Ito Y, Nakano A, Hara-Nishimura I, Shimada T.: Synaptotagmin-associated endoplasmic reticulum-plasma membrane contact sites are localized to immobile ER tubules. Plant Physiol. 178: 641-653 (2018).

Shimada T, Kunieda T, Sumi S, Koumoto Y, Tamura K, Hatano K, Ueda H, Hara-Nishimura I.: The AP-1 complex is required for proper mucilage formation in Arabidopsis seeds. Plant Cell Physiol. 59: 2331-2338 (2018).

Takenaka Y, Kato K, Ogawa-Ohnishi M, Tsuruhama K, Kajiura H, Yagyu K, Takeda A, Takeda Y, Kunieda T, Hara-Nishimura I, Kuroha T, Nishitani K, Matsubayashi Y, Ishimizu T.: Pectin RG-I rhamnosyltransferases represent a novel plant-specific glycosyltransferase family. Nature Plants. 4: 669-676 (2018).

Hamada T, Yako M, Minegishi M, Sato M, Kamei Y, Yanagawa Y, Toyooka K, Watanabe Y, Hara-Nishimura I. Stress granule formation is induced by a threshold temperature rather than a temperature difference in Arabidopsis. J Cell Sci. 131: pii: jcs216051 (2018).

Ueda H, Ohta N, Kimori Y, Uchida T, Shimada T, Tamura K, Hara-Nishimura I. Endoplasmic reticulum (ER) membrane proteins (LUNAPARKs) are required for proper configuration of the cortical ER network in plant cells. Plant Cell Physiol. 59: 1931-1941 (2018).

Hatsugai N, Nakatsuji A, Unten O, Ogasawara K, Kondo M, Nishimura M, Shimada T, Katagiri F, Hara-Nishimura I.: Involvement of adapter protein complex 4 in hypersensitive cell death induced by avirulent bacteria. Plant Physiol. 176: 1824-1834 (2018).

Brozovic, M., Dantec, C., Dardaillon, J., Dauga, D., Faure, E., Gineste, M., Louis, A., Naville, M., Nitta, K.R., Piette, J., Reeves, W., Scornavacca, C., Simion, P., Vincentelli, R., Bellec, M., Aicha, S.B., Fagotto, M., Guéroult-Bellone, M., Haeussler, M., Jacox, E., Lowe, E.K., Mendez, M., Roberge, A., Stolfi, A., Yokomori, R., Brown, C.T., Cambillau, C., Christiaen, L., Delsuc, F., Douzery, E., Dumollard, R,, Kusakabe, T., Nakai, K., Nishida, H., Satou, Y., Swalla, B., Veeman, M., Volff, J.N., and Lemaire, P.: ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets. Nucl. Acids Res. 46 (D1): D718-D725 (2018).

Horie, T., Horie, R., Chen, K., Cao, C., Nakagawa, M., Kusakabe, T. G., Satoh, N., Sasakura, Y., and Levine, M.: Regulatory cocktail for dopaminergic neurons in a protovertebrate identified by whole-embryo single-cell transcriptomics. Genes Dev. 32: 1297-1302 (2018).

Hirai, J., Hamamoto, Y., Honda, D., and Hidaka, K: Possible aplanochytrid (Labyrinthulea) prey detected using 18S metagenetic diet analysis in the key copepod species Calanus sinicus in the coastal waters of the subtropical western North Pacific. Plankton and Benthos Research 13, 1-8 (2018).

Iwata I. and Honda D.: Nutritional intake by ectoplasmic nets of Schizochytrium　aggregatum (Labyrinthulomycetes, Stramenopiles). Protist 169: 727-743 (2018).

Nakamura Y, Iwata I, Hori RS, Uchiyama N, Tuji A, Fujita MJ, Honda D, Ohfuji H.: Elemental composition and ultrafine structure of the skeleton in shell-bearing protists-A case study of phaeodarians and radiolarians. J Struct Biol. 204: 45-51 (2018).

Uchihashi, T., Watanabe, YH., Nakazaki, Y., Yamasaki, T., Watanabe, H., Maruno, T., Ishii, K., Uchiyama, S., Song, C., Murata, K., Iino, R., Ando, T.: Dynamic structural states of ClpB involved in its disaggregation function. Nature Commun. 9: 2147 (2018).

Sugita, S., Watanabe, K., Hashimoto, K., Niwa, T., Uemura, E., Taguchi, H., Watanabe, YH.: Electrostatic interactions between middle domain motif-1 and the AAA1 module of the bacterial ClpB chaperone are essential for protein disaggregation. J. Biol. Chem. 293: 19228-19239 (2018).

Ujisawa, T., Ohta, A., Ii, T., Minakuchi, Y., Toyoda, A., Ii, M., Kuhara, A.: Endoribonuclease ENDU-2 regulates multiple traits including cold tolerance via cell autonomous and nonautonomous controls in C. elegans. Proc. Natl. Acad. Sci. U.S.A. 115: 8823-8828 (2018).

Watanabe, D., Kajihara, T., Sugimoto, Y., Takagi, K., Mizuno, M., Zhou, Y., Chen, J., Takeda, K., Tatebe, H., Shiozaki, K., Nakazawa, N., Izawa, S., Akao, T., Shimoi, H., Maeda, T., and Takagi, H.: Nutrient Signaling via the TORC1-Greatwall-PP2AB55δ Pathway Responsible for the High Initial Rates of Alcoholic Fermentation in Sake Yeast Strains of Saccharomyces cerevisiae. Appl. Environ. Microbiol. 85: e02083-18 (2018).

Gotoh, A., Shigenobu, S., Yamaguchi, K., Kobayashi, S., Ito, F. and Tsuji, K.: Transcriptome characterization of male accessory glands in ants to identify molecules involved in their reproductive success. Insect Mol. Biol. 27: 212-210 (2018).

Gotoh, A. and Furukawa, K.: Journey of sperms from production by males to storage by queens in Crematogaster osakensis (Hymenoptera: Formicidae). J. Insect Physiol. 105: 95-101 (2018).

Inoue S, Morita R, Kuwata K, Kunieda T, Ueda H, Hara-Nishimura I, Minami Y.: Tissue-specific and intracellular localization of indican synthase from Polygonum tinctorium. Plant Physiol Biochem. 132: 138-144 (2018).

Ishikawa K, Tamura K, Ueda H, Ito Y, Nakano A, Hara-Nishimura I, Shimada T.: Synaptotagmin-associated endoplasmic reticulum-plasma membrane contact sites are localized to immobile ER tubules. Plant Physiol. 178: 641-653 (2018).

Shimada T, Kunieda T, Sumi S, Koumoto Y, Tamura K, Hatano K, Ueda H, Hara-Nishimura I.: The AP-1 complex is required for proper mucilage formation in Arabidopsis seeds. Plant Cell Physiol. 59: 2331-2338 (2018).

Ueda H, Ohta N, Kimori Y, Uchida T, Shimada T, Tamura K, Hara-Nishimura I. Endoplasmic reticulum (ER) membrane proteins (LUNAPARKs) are required for proper configuration of the cortical ER network in plant cells. Plant Cell Physiol. 59: 1931-1941 (2018).

Hatsugai N., Hara-Nishimura I. (2018) Measurement of the Caspase-1-Like Activity of Vacuolar Processing Enzyme in Plants. In: De Gara L., Locato V. (eds) Plant Programmed Cell Death. Methods in Molecular Biology, vol 1743. Humana Press, New York, NY, pp. 163-171.

Shimada T, Fuji K, Ichino T, Teh OK, Koumoto Y, Hara-Nishimura I.: GREEN FLUORESCENT SEED, to evaluate vacuolar trafficking in Arabidopsis seeds. Methods Mol Biol. 1789: 1-7 (2018).

Shimai, K. and Kusakabe, T. G.: The use of cis-regulatory DNAs as molecular tools. In: Yasunori Sasakura (Eds) Transgenic Ascidians, Advances in Experimental Medicine and Biology, vol 1029, Springer Nature Singapore Pte Ltd., pp. 49-68 (2018).

弥益恭・中尾啓子・野口航 共編/駒﨑伸二・松田学・小林哲也・林謙介・種子田春彦・日下部岳広・大塚俊之・山内啓太郎・西廣淳・山本奈津子 共著：『新しい生物科学』培風館 (2018).

本多大輔：応用利用される微細藻類．永宗喜三郎，島野智之，矢吹彬憲（編集），「アメーバのはなし　—原生生物・人・感染症—」，朝倉書店，p. 73 (2018).

Shirakawa M, Hara-Nishimura I.: Specialized Vacuoles of Myrosin Cells: Chemical defense strategy in brassicales plants. Plant Cell Physiol. 59: 1309-1316 (2018).

Shimada TL, Hayashi M, Hara-Nishimura I.: Membrane dynamics and multiple functions of oil bodies in seeds and leaves. Plant Physiol. 176: 199-207 (2018).

Shimada T, Takagi J, Ichino T, Shirakawa M, Hara-Nishimura I.: Plant Vacuoles. Annu Rev Plant Biol. 69: 123-145 (2018).

Martinoia E, Mimura T, Hara-Nishimura I, Shiratake K.: The Multifaceted roles of plant vacuoles. Plant Cell Physiol. 59: 1285-1287 (2018).

Kuhara, A. and Ohta, A.: Temperature response in cold tolerance of C. elegans. Impact 7: 44-46 (2018).

Ohnishi K., Takagaki N., Okahata M., Fujita M., Ohta A., and Kuhara A.: Molecular and cellular network systems underlying cold tolerance of Caenorhabditis elegans. Cryobiol. Cryotechnol. 64: 53-59 (2018).

藤田茉優，大西康平，太田茜，久原篤: 低温耐性を司る組織ネットワーク. 月刊「細胞」特集 低温の生物学と医学 50: 464-467 (2018).

中台（鹿毛）枝里子, 太田茜，宇治澤知代，孫思墨, 西川禎一, 久原篤，三谷昌平: 線虫感覚受容器のグリアーニューロン相互作用と低温耐性. 月刊「細胞」 50: 480-483 (2018).

後藤彩子: アリ科女王の長期間にわたる精子貯蔵メカニズム．比較生理生化学 35: 150-157 (2018)

Watanabe E, Mano S, Hara-Nishimura I, Nishimura M, Yamada K.: HSP90 stabilizes auxin receptor TIR1 and ensures plasticity of auxin responses. Plant Signal. Behav. 12: e1311439 (2017).

Wang S, Yoshinari A, Shimada T, Hara-Nishimura I, Mitani-Ueno N, Feng Ma J, Naito S, Takano J.: Polar Localization of the NIP5;1 Boric Acid Channel Is Maintained by Endocytosis and Facilitates Boron Transport in Arabidopsis Roots. Plant Cell 29: 824-842 (2017).

Sakai Y, Sugano SS, Kawase T, Shirakawa M, Imai Y, Kawamoto Y, Sugiyama H, Nakagawa T, Hara-Nishimura I, Shimada T.: The chemical compound bubblin induces stomatal mispatterning in Arabidopsis by disrupting the intrinsic polarity of stomatal lineage cells. Development 144: 499-506 (2017).

Tamura K, Fukao Y, Hatsugai N, Katagiri F, Hara-Nishimura I.: Nup82 functions redundantly with Nup136 in a salicylic acid-dependent defense response of Arabidopsis thaliana. Nucleus 8: 301-311 (2017).

Nakano RT, Piślewska-Bednarek M, Yamada K, Edger PP, Miyahara M, Kondo M, Böttcher C, Mori M, Nishimura M, Schulze-Lefert P, Hara-Nishimura I, Bednarek P.: PYK10 myrosinase reveals a functional coordination between endoplasmic reticulum bodies and glucosinolates in Arabidopsis thaliana. Plant J. 89: 204-220 (2017).

Yanagawa, D., Ishikawa, T., and Imai, H.: Synthesis and degradation of long-chain base phosphates affect fumonisin B1-induced cell death in Arabidopsis thaliana. J. Plant Res. 130: 571-585 (2017).

Kida, T., Itoh, A., Kimura, A., Matsuoka, H., Imai, H., Kogure, K., Tokumura, A., and Tanaka, T.: Distribution of glycosylinositol phosphoceramide-specific phospholipase D activity in plants. J. Biochem. 161: 187-195 (2017).

Hu, H., Uesaka, M., Guo, S., Shimai, K., Lu, T.-M. Li, F., Fujimoto, S., Ishikawa, M., Liu, S., Sasagawa, Y., Zhang, G., Kuratani, S., Yu, J.-K., Kusakabe, T. G., Khaitovich, P., Irie, N. and the EXPANDE Consortium: Constrained vertebrate evolution by pleiotropic genes. Nature Ecol. Evol. 1: 1722-1730 (2017).

Kojima, K., Yamashita, T., Imamoto, Y., Kusakabe, T. G., Tsuda, M., and Shichida, Y.: Evolutionary steps involving counterion displacement in a tunicate opsin. Proc. Natl. Acad. Sci. U.S.A. 114: 6028-6033 (2017).

Doi, K. and Honda, D.: Proposal of Monorhizochytrium globosum gen. nov., comb. nov. (Stramenopiles, Labyrinthulomycetes) for former Thraustochytrium globosum based on morphological features and phylogenetic relationships. Phycol. Res. 65, 188-201 (2017).

Iwata, I., Kimura, K., Tomaru, Y., Motomura, T., Koike, Kana., Koike, Kazu., and Honda, D.: Bothrosome Formation in Schizochytrium aggregatum (Labyrinthulomycetes, Stramenopiles) during Zoospore Settlement. Protist 168: 206-219 (2017).

Hayashi, S., Nakazaki, Y., Kagii, K., Imamura, H., and Watanabe, YH.: Fusion protein analysis reveals the precise regulation between Hsp70 and Hsp100 during protein disaggregation. Sci. Rep. 7: 8648 (2017).

Gotoh, A., Shigenobu, S., Yamaguchi, K., Kobayashi, S., Ito, F. and Tsuji, K.: Transcriptome profiling of the spermatheca identifies genes potentially involved in the long-term sperm storage of ant queens. Sci. Rep. 7, 5972 (2017).

Gotoh, A., Dansho, M., Dobata, S., Ikeshita, Y. and Ito, F.: Social structure of the polygynous ant, Crematogaster osakensis. Insectes Soc. 64, 123-131 (2017).

Shimada T., Hara-Nishimura I.: Isolation of Protein Storage Vacuoles and Their Membranes. In: Taylor N., Millar A. (eds) Isolation of Plant Organelles and Structures. Methods in Molecular Biology, vol 1511. Humana Press, New York, NY, pp. 163-168 (2017).

Kusakabe, T. G.: Identifying vertebrate brain prototypes in deuterostomes. In: Shuichi Shigeno, Yasunori Murakami, Tadashi Nomura (Eds) Brain Evolution by Design: From Neural Origin to Cognitive Architecture. Springer Japan, Tokyo, pp. 153-186 (2017).

Reuel M. Bennett, Daiske Honda, Gordon W. Beakes, Marco Thines: Labyroouthylomycota. In: John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, (Eds) Handbook of the Protists. Springer International Publishing, Cham, Switzerland, pp. 507-542 (2017).

本多大輔: DHAをつくる微生物．In: 北本勝ひこ，春田伸，丸山潤一，後藤慶一，尾花望，齋藤勝晴（編）食と微生物の事典，pp. 172-173 (2017).

後藤彩子: 昆虫におけるメスの精子貯蔵器官の機能に関わる分子．甲南大学紀要 理工学編 64, 1-16 (2017).

Watanabe E, Mano S, Nomoto M, Tada Y, Hara-Nishimura I, Nishimura M, Yamada K.: HSP90 Stabilizes Auxin-Responsive Phenotypes by Masking a Mutation in the Auxin Receptor TIR1. Plant Cell Physiol. 57: 2245-2254 (2016).

Hatsugai N, Hillmer R, Yamaoka S, Hara-Nishimura I, Katagiri F.: The μ subunit of Arabidopsis adaptor protein-2 is involved in effector-triggered immunity mediated by membrane-localized resistance proteins. Mol. Plant Microbe Interact. 29: 345-351 (2016).

Takahashi, D., Imai, H., Kawamura, Y., and Uemura, M.: Lipid profiles of detergent resistant fractions of the plasma membrane in oat and rye in association with cold acclimation and freezing tolerance. Cryobiology 72: 123-134 (2016).

Yokomori, R., Shimai, K., Nishitsuji, K., Suzuki, Y., Kusakabe, T. G., and Nakai, K.: Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis. Genome Res. 26: 140-150 (2016).

Oonuma, K., Tanaka, M., Nishitsuji, K., Kato, Y., Shimai, K., and Kusakabe, T. G.: Revised lineage of larval photoreceptor cells in Ciona reveals archetypal collaboration between neural tube and neural crest in sensory organ formation. Dev. Biol. 420: 178-185 (2016).

Sonoda, S., Ohta, A., Maruo, A., Ujisawa, T., and Kuhara, A.: Sperm affects head sensory neuron in temperature tolerance of Caenorhabditis elegans. Cell Reports 16: 56-65 (2016).

Okahata M., Ohta A., Mizutani H., Minakuchi Y., Toyoda A., and Kuhara A.: Natural variations of cold tolerance and temperature acclimation in Caenorhabditis elegans. J. Comp. Physiol. B 186: 985-998 (2016).

Ujisawa T., Ohta A., Uda-Yagi M., and Kuhara A.: Diverse regulation of temperature sensation by trimeric G-protein signaling in C. elegans. PLOS ONE 11: e0165518 (2016).

Kage-Nakadai E., Ohta A., Ujisawa T., Sun S., Nishikawa Y., Kuhara A., and Mitani S.: A C. elegans homolog of Prox1/Prospero is expressed in the glia and is required for sensory behavior and cold tolerance. Genes Cells 21: 936-948 (2016).

Tsukada, Y., Yamao, M., Honda, N., Shimowada, T., Ohnishi, N., Kuhara, A., Ishii, S., and Mori I.: Reconstruction of spatial thermal gradient encoded in thermosensory neuron AFD in Caenorhabditis elegans. J. Neurosci. 36: 2571-2581 (2016).

Pluskal, T., Sajiki, K., Becker, J., Takeda, K., and Yanagida, M.: Diverse fission yeast genes required for responding to oxidative and metal stress: Comparative analysis of glutathione-related and other defense gene deletions. Genes Cells 21: 530-542 (2016).

Masuda, F., Ishii, M., Mori, A., Uehara, L., Yanagida, M., Takeda, K., and Saitoh, S.: Glucose restriction induces transient G2 cell cycle arrest extending cellular chronological lifespan. Sci. Rep. 6: 19629 (2016).

Gotoh, A., Billen, J., Hashim, R. and Ito, F.: Degeneration patterns of the worker spermatheca during morphogenesis in ants (Hymenoptera: Formicidae). Evol. Dev. 18: 127-136 (2016).

Shirakawa M, Ueda H, Shimada T, Hara-Nishimura I.: FAMA: a molecular link between stomata and myrosin cells. Trends Plant Sci. 21: 861-871 (2016).

今井博之，柳川大樹: 植物スフィンゴ脂質の構造多様性と代謝経路の解析. 生化学88 (1), 94-104 (2016).

島井光太郎，日下部岳広: 太古に遡る嗅覚と生殖のつながり —ホヤを使った研究から—. AROMA RESEARCH 第17巻 第1号（通巻65号），42-44 (2016).

日下部岳広: ホヤ幼生のGnRH神経系と頭部感覚器の起源．比較内分泌学　第42巻 第159号, 106-107 (2016).

上田真由美，野村友佳，土井耕作，中嶋昌紀，本多大輔: ラビリンチュラ類の多様性と生態的役割．海洋と生物 8: 5-11 (2016).

柳川大樹，田中修，日下部岳広，本多大輔，後藤彩子，今井博之: シロイヌナズナにおけるスフィンゴイドキナーゼ(LCBK1)の形質転換体の作製．甲南大学紀要　理工学編　62: 1-18 (2015).

Abitua, P. B., Gainous, T. B., Kaczmarczyk, A. N., Winchell, C. J., Hudson, C., Kamata, K., Nakagawa, M., Tsuda, M., Kusakabe, T. G., and Levine, M.: The pre-vertebrate origins of neurogenic placodes. Nature 524, 462-465 (2015).

柳川大樹，田中修，日下部岳広，本多大輔，後藤彩子，今井博之: シロイヌナズナにおけるスフィンゴイドキナーゼ(LCBK1)の形質転換体の作製．甲南大学紀要　理工学編　62: 1-18 (2015).

Ueda, M., Nomura, Y., Doi, K., Nakajima, M., and Honda, D.: Seasonal dynamics of culturable thraustochytrids (Labyrinthulomycetes, Stramenopiles) in estuarine and coastal waters. Aquat. Microb. Ecol. 74, 187-204 (2015).

Takao, Y., Tomaru, Y., Nagasaki, K., and Honda, D.: Ecological dynamics of two distinct viruses infecting marine eukaryotic decomposer thraustochytrids (Labyrinthulomycetes, Stramenopiles). PLoS One 10, e0133395 (2015).

柳川大樹，田中修，日下部岳広，本多大輔，後藤彩子，今井博之: シロイヌナズナにおけるスフィンゴイドキナーゼ(LCBK1)の形質転換体の作製．甲南大学紀要　理工学編　62: 1-18 (2015).

Mukai, M., Hira, S., Nakamura, K., Nakamura, S., Kimura, H., Sato, M., and Kobayashi, S.: H3K36 trimethylation-mediated epigenetic regulation is activated by bam and promotes germ cell differentiation during early oogenesis in Drosophila. Biology Open 4: 119-124 (2015).

Sato, Y, Mukai, M., and Kimura, H.: Histone acetylation on Drosophila polytene chromosomes visualized by mintbody. Cytologia 80: 383-384 (2015).

Yamasaki, T., Oohata, Y., Nakamura, T., and Watanabe, YH.: Analysis of the cooperative ATPase cycle of the AAA+ chaperone ClpB from Thermus thermophilus by using ordered heterohexamers with an alternating subunit arrangement. J. Biol. Chem. 290: 9789-9800 (2015).

Takeda, K., Mori, A., Starzynski, C., and Yanagida, M. (2015) The critical glucose concentration for respiration-independent proliferation of fission yeast, Schizosaccharomyces pombe. Mitochondrion 22: 91-95 (2015).

柳川大樹，田中修，日下部岳広，本多大輔，後藤彩子，今井博之: シロイヌナズナにおけるスフィンゴイドキナーゼ(LCBK1)の形質転換体の作製．甲南大学紀要　理工学編　62: 1-18 (2015).

太田茜、園田悟、久原篤: 匂いに慣れたらどうなるの？　センチュウの匂い順応テスト：嗅覚順応行動の測定. 研究者が教える動物実験　第1巻 感覚 （比較生理生化学会 編，共立出版），pp. 42-45 (2015).

久原篤、太田茜: 緑色にキラリと光る細胞を見てみよう　緑色蛍光タンパク質GFPによる神経細胞の観察. 
研究者が教える動物実験　第2巻 神経・筋 （比較生理生化学会 編，共立出版），pp. 20-23 (2015).

太田茜、園田悟、久原篤: 好きなにおいに向かっていく行動を見てみよう　センチュウの走化性テスト：嗅覚応答行動の測定. 
研究者が教える動物実験　第3巻 行動（比較生理生化学会 編，共立出版），pp. 32-35 (2015).

久原篤、太田茜: 好きな温度に向かう行動を調べよう　センチュウの温度走性テスト：温度応答行動の測定. 
研究者が教える動物実験　第3巻 行動（比較生理生化学会 編，共立出版），pp. 36-39 (2015).

太田茜、園田悟、久原篤: 遺伝子の突然変異のDNAを見てみよう　PCR法と制限酵素による突然変異部位の可視化.
研究者が教える動物実験　第3巻 行動（比較生理生化学会 編，共立出版），pp. 40-43 (2015).

久原篤，宇治澤知代，太田茜: 線虫 Caenorhabditis elegans の温度適応を制御する神経と腸を介した情報処理. 
比較生理生化学 32 (2): 67-75 (2015).

Ishikawa, T. Imai, H., and Kawai-Yamada, M.: Development of an LC-MS/MS method for the analysis of free sphingoid bases using 4-fluoro-7-nitrobenzofurazan (NBD-F). Lipids 49: 295-304 (2014).

Daido, Y., Hamanishi, S., and Kusakabe, T. G.: Transcriptional co-regulation of evolutionarily conserved microRNA/cone opsin gene pairs: implications for photoreceptor subtype specification. Dev. Biol. 392: 117-129 (2014).

Kamiya, C., Ohta, N., Ogura, Y., Yoshida, K., Horie, T., Kusakabe, T. G., Satake, H., and Sasakura, Y.: Non-reproductive role of gonadotropin-releasing hormone in the control of ascidian metamorphosis. Dev. Dynam. 243: 1524-1535 (2014).

Ohta, A., Ujisawa, T., Sonoda, S., and Kuhara, A.: Light and pheromone-sensing neuron regulates cold habituation through insulin signaling in C. elegans. Nature commun. 5: 4412 (2014).

Ujisawa T., Ohta, A., Okahata M., Sonoda S., and Kuhara, A.: Cold tolerance assay for studying cultivation-temperature-dependent cold habituation in C. elegans. Protocol Exchange, doi:10.1038/protex.2014.032 (2014).

Ujisawa T., Ohta, A., and Kuhara, A.: Long-term calcium imaging of ASJ sensory neuron controlling cold tolerance in Caenorhabditis elegans. Protocol Exchange, doi:10.1038/protex.2014.034 (2014).

hu, D., Tanabe, S., Xie, C., Honda, D., Sun, J., and Ai, L.: Bacillus ligniniphilus sp. nov., an alkaliphilic and halotolerant bacterium isolated from sediments of the South China Sea. Int. J. Syst. Evol. Microbiol. 64: 1712-1717 (2014).

Abe, E., Ikeda, K., Nutahara, E., Hayashi, M., Yamashita A., Taguchi, R., Doi K., Honda D., Okino N., and Ito, M.: Novel lysophospholipid acyltransferase PLAT1 of Aurantiochytrium limacinum F26-b responsible for generation of palmitate-docosahexaenoate-phosphatidylcholine and phosphatidylethanolamine. PLoS One 9: e102377 (2014).

Nakazawa, A., Kokubun, Y., Matsuura, H., Yonezawa, N., Kose, R., Yoshida, M., Tanabe, Y., Kusuda, E., Thang, D. V., Ueda, M., Honda, D., Mahakhant, A., Kaya, K., and Watanabe, M. M.: TLC screening of thraustochytrid strains for squalene production. J. Appl. Phycol. 26: 29-41 (2014).

Nakazaki, Y. and Watanabe, YH.: ClpB chaperone passively threads soluble denatured proteins through its central pore. Genes Cells 19: 891-900 (2014).

Kitagawa, T., Ishii, K., Takeda, K., and Matsumoto, T.: The 19S proteasome subunit Rpt3 regulates distribution of CENP-A by associating with centromeric chromatin. Nature commun. 5: 3597 (2014).

田中修「植物は命がけ」中公文庫，中央公論新社 (2014).

田中修「植物は人類最強の相棒である」PHP新書株式会社，PHP研究所 (2014).

田中修「宇宙や生きもののひみつ」分担執筆，NHK ラジオセンター 「子ども科学電話相談」製作班・編，日本放送出版協会（NHK出版） (2014).

本多大輔: ラビリンチュラ菌類．菌類の生物学（日本菌学会 企画，柿嶌眞・徳増征二 責任編集，共立出版），pp. 122-130 (2014)．

田中修「植物は人類最強の相棒である」香料 No.263: 21-28 (2014).

田中修「植物の生き方に学ぶ夢を花咲かすためには？ 「経団連」Vol.62 No.3: 49 日本経済団体連合会 (2014). 田中修「チューリップの七不思議」そよかぜ通信　2014年秋号: 10-13. 教育出版 (2014). 田中修「花と緑の勉強室⑫」プランツ＆ガーデン 160: 25-29. 日本園芸協会 (2014). 田中修「花と緑の勉強室⑬」プランツ＆ガーデン 161: 21-25. 日本園芸協会 (2014).

田中修「花と緑の勉強室⑭」プランツ＆ガーデン 162: 21-25. 日本園芸協会 (2014).

田中修「花と緑の勉強室⑮」プランツ＆ガーデン 163: 25-29. 日本園芸協会 (2014).

田中修「植物生理学入門一植物たちの不思議9」Medical Herb 28: 34-35. 日本メディカルハーブ協会 (2014).

田中修「植物生理学入門一植物たちの不思議10」Medical Herb 29: 34-35. 日本メディカルハーブ協会 (2014). 田中修「植物生理学入門一植物たちの不思議11」Medical Herb 30: 36-37. 日本メディカルハーブ協会 (2014).

田中修「植物生理学入門一植物たちの不思議12」Medical Herb 31: 36-37. 日本メディカルハーブ協会 (2014).

田中修「花と野菜のふしぎ解体新書（13）」園芸新知識「はなとやさい」Vol.69 No.1: 45-46. タキイ種苗株式会社 (2014).

田中修「花と野菜のふしぎ解体新書（14）」園芸新知識「はなとやさい」Vol.69 No.2: 47-48. タキイ種苗株式会社 (2014).

田中修「花と野菜のふしぎ解体新書（15）」園芸新知識「はなとやさい」Vol.69 No.3: 45-46. タキイ種苗株式会社 (2014).

田中修「花と野菜のふしぎ解体新書（16）」園芸新知識「はなとやさい」Vol.69 No.4: 45-46. タキイ種苗株式会社 (2014).

田中修「花と野菜のふしぎ解体新書（17）」園芸新知識「はなとやさい」Vol.69 No.5: 45-46. タキイ種苗株式会社 (2014).

田中修「花と野菜のふしぎ解体新書（18）」園芸新知識「はなとやさい」Vol.69 No.6: 45-46. タキイ種苗株式会社 (2014).

田中修「花と野菜のふしぎ解体新書（19）」園芸新知識「はなとやさい」Vol.69 No.7: 45-46. タキイ種苗株式会社 (2014).

田中修「花と野菜のふしぎ解体新書（20）」園芸新知識「はなとやさい」Vol.69 No.8: 47-48. タキイ種苗株式会社 (2014).

田中修「花と野菜のふしぎ解体新書（21）」園芸新知識「はなとやさい」Vol.69 No.9: 45-46. タキイ種苗株式会社 (2014).

田中修「花と野菜のふしぎ解体新書（22）」園芸新知識「はなとやさい」Vol.69 No.10: 45-46. タキイ種苗株式会社 (2014).

田中修「花と野菜のふしぎ解体新書（23）」園芸新知識「はなとやさい」Vol.69 No.11: 45-46. タキイ種苗株式会社 (2014).

田中修「花と野菜のふしぎ解体新書（24）」園芸新知識「はなとやさい」Vol.69 No.12: 84-85. タキイ種苗株式会社 (2014).

田中修「ウメとサクラ開花前線のふしぎ」NHK 「趣味の園芸」 No.493: 43-44 日本放送出版協会（NHK出版） (2014).

田中修「日本人が発見したふしぎな物質」NHK 「趣味の園芸」 No.494: 84-85 日本放送出版協会（NHK出版） (2014).

田中修「タマネギの3つのふしぎ」NHK 「趣味の園芸」 No.495: 84-85 日本放送出版協会（NHK出版） (2014).

田中修「野菜のどこを食べるのか？ 」NHK 「趣味の園芸」 No.496: 84-85 日本放送出版協会（NHK出版） (2014).

田中修「夏に花が咲かないアサガオの不思議」NHK 「趣味の園芸」 No.497: 84-85 日本放送出版協会（NHK出版） (2014).

田中修「決まった季節に草花が花を咲かせる不思議」NHK 「趣味の園芸」 No.498: 84-85 日本放送出版協会（NHK出版） (2014).

田中修「植物が夜の長さをはかる不思議」NHK 「趣味の園芸」 No.499: 84-85 日本放送出版協会（NHK出版） (2014).

田中修「葉っぱが夜の長さをはかる不思議」NHK 「趣味の園芸」 No.500: 100-101 日本放送出版協会（NHK出版） (2014).

田中修「『葉で夜を感じ、芽で膏をつくる』という不思議」NHK 「趣味の園芸」 No.501: 84-85 日本放送出版協会（NHK出版） (2014).

田中修「暑い夏に咲き誇る『国を象徴する花』」KARO 50: 11-12 財団法人小原流 (2014).

田中修「植物は人類最強の相棒である」北陸中日懇話会会報 402: 2-38. 北陸中日新聞 (2014).

田中修「読書心を刺激する香り」空想書店　7月13日朝刊，読売新聞 (2014).

Miyawaki T, Matsumoto S, Takahashi W, Tanaka O.: Effect of heat-treated noradrenaline on flowering in Lemna. Biosci. Biotechnol. Biochem. 77: 1586-1588 (2013).

Endo, J., Takahashi, W., Mineyuki Yokoyama, M., and Tanaka, O.: Induction of gene expression for systemic acquired resistance in tobacco by 9-hydroxy-10-oxo-12(Z),15(Z)-octadecadienoic acid (KODA). Canadian Journal of Plant Science 93: 827-830 (2013).

Tanaka, T., Kida, T., Imai, H., Morishige, J., Yamashita, R., Matsuoka, H., Uozumi, S., Nagano, M. and Tokumura, A.: Identification of a sphingolipid-specific phospholipase D activity associated with the generation of phytoceramide-1-phosphate in cabbage leaves. FFBS J. 280: 3797-3809 (2013).

Syuto, M., Kusakabe, T., Honda, D., Watanabe, Y., Takeda, K., Tanaka, O., and Imai, H.: Determination of D-serine in several model organisms used for metabolic, developmental and/or genetic researches by liquid chromatography/fluorescence detection and tandem mass spectrometry. Mem. Konan Univ. Sci. Eng. Ser. 60: 11-19 (2013).

Kusakabe, R., Tani, S., Nishitsuji, K., Shindo, M., Okamura, K., Miyamoto, Y., Nakai, K., Suzuki, Y., Kusakabe, T. G., and Inoue, K.: Characterization of the compact bicistronic microRNA precursor, miR-1/miR-133, expressed specifically in Ciona muscle tissues. Gene Expr. Patterns 13: 43-50 (2013).

Syuto, M., Kusakabe, T., Honda, D., Watanabe, Y., Takeda, K., Tanaka, O., and Imai, H.: Determination of D-serine in several model organisms used for metabolic, developmental and/or genetic researches by liquid chromatography/fluorescence detection and tandem mass spectrometry. Mem. Konan Univ. Sci. Eng. Ser. 60: 11-19 (2013).

Kimura, T., Kita, H., Hira, S., Kuhara, A., Kusakabe, T. G., Michinomae, M., Kobayashi, S., and Mukai, M.: Transcriptional regulatory regions that promote innexin2 expression in somatic support cells in the Drosophila ovary. Mem. Konan Univ. Sci. Eng. Ser. 60: 1-9 (2013).

Syuto, M., Kusakabe, T., Honda, D., Watanabe, Y., Takeda, K., Tanaka, O., and Imai, H.: Determination of D-serine in several model organisms used for metabolic, developmental and/or genetic researches by liquid chromatography/fluorescence detection and tandem mass spectrometry. Mem. Konan Univ. Sci. Eng. Ser. 60: 11-19 (2013).

Hira, S., Okamoto, T., Fujiwara, M., Kita, H., Kobayashi, S., and Mukai, M.: Binding of Drosophila maternal Mamo protein to chromatin and specific DNA sequences. Biochem. Biophys Res. Commun. 438, 156-160 (2013).

Sato, Y., Mukai, M., Ueda, J., Muraki, M. Stasevich, T. J., Horikoshi, N., Kujirai, T., Kita, H., Kimura, T., Hira, S., Okada, Y., Hayashi-Takanaka, Y., Obuse, C., Kurumizaka, H., Kawahara, A., Yamagata, K., Nozaki, N., and Kimura, H.: Genetically encoded system to track histone acetylation in vivo. Sci. Rep. 3: 2436 (2013).

Kimura, T., Kita, H., Hira, S., Kuhara, A., Kusakabe, T. G., Michinomae, M., Kobayashi, S., and Mukai, M.: Transcriptional regulatory regions that promote innexin2 expression in somatic support cells in the Drosophila ovary. Mem. Konan Univ. Sci. Eng. Ser. 60: 1-9 (2013).

Ohta, A. and Kuhara, A.: Molecular mechanism for trimetric G protein-coupled thermosensation and synaptic regulation in the temperature response circuit of Caenorhabditis elegans. Neurosci. Res. 76 (3), 119–124 (2013).

Nagano, N., Taoka, Y., Honda, D., and Hayashi M: Effect of trace elements on growth of marine eukaryotes. J. Biosci. Bioeng. 116, 337–339 (2013).

Kimura, T., Kita, H., Hira, S., Kuhara, A., Kusakabe, T. G., Michinomae, M., Kobayashi, S., and Mukai, M.: Transcriptional regulatory regions that promote innexin2 expression in somatic support cells in the Drosophila ovary. Mem. Konan Univ. Sci. Eng. Ser. 60: 1-9 (2013).

Syuto, M., Kusakabe, T., Honda, D., Watanabe, Y., Takeda, K., Tanaka, O., and Imai, H.: Determination of D-serine in several model organisms used for metabolic, developmental and/or genetic researches by liquid chromatography/fluorescence detection and tandem mass spectrometry. Mem. Konan Univ. Sci. Eng. Ser. 60: 11-19 (2013).

田中修「植物のあっぱれな生き方」幻冬舎新書，幻冬舎 (2013).

田中修「フルーツひとつばなし」講談社現代新書，講談社 (2013).

田中修 分担執筆「生きもののなぞ９９」NHK ラジオセンター 「子ども科学電話相談」製作班・編，日本放送出版協会（NHK出版） (2013).

本多大輔: 偽菌類の分類と生活史−ラビリンチュラ菌門，偽菌類の同定−ラビリンチュラ菌．菌類の事典（日本菌学会編，朝倉書店），pp. 39-41, 422-423 (2013).

田中修「植物にやさしい言葉をかけて育てたら？」セラピスト 66: 35 BABジャパン (2013).

田中修「植物はなぜ美しく装うのか？」挿花 750: 14-15. 財団法人小原流 (2013).

田中修「アサガオの七不思議」そよかぜ通信 2013年秋号: 4-7. 教育出版 (2013).

田中修「花と緑の勉強室⑳」プランツ＆ガーデン 156: 19-23. 日本園芸協会 (2013).

田中修「花と緑の勉強室㉑」プランツ＆ガーデン 157: 21-25. 日本園芸協会 (2013).

田中修「花と緑の勉強室㉒」プランツ＆ガーデン 158: 21-25. 日本園芸協会 (2013).

田中修「花と緑の勉強室㉓」プランツ＆ガーデン 159: 25-29. 日本園芸協会 (2013).

田中修「植物生理学入門一植物たちの不思議 その5」Medical Herb 24: 36-37. 日本メディカルハーブ協会 (2013).

田中修「植物生理学入門一植物たちの不思議 その6」Medical Herb 25: 32-33. 日本メディカルハーブ協会 (2013).

田中修「植物生理学入門一植物たちの不思議 その7」Medical Herb 26: 38-39. 日本メディカルハーブ協会 (2013).

田中修「植物生理学入門一植物たちの不思議 その8」Medical Herb 27: 36-37. 日本メディカルハーブ協会 (2014).

田中修「花と野菜のふしぎ解体新書（1）」園芸新知識「はなとやさい」Vol.68 No.1: 45-46. タキイ種苗株式会社 (2013).

田中修「花と野菜のふしぎ解体新書（2）」園芸新知識「はなとやさい」Vol.68 No.2: 47-48. タキイ種苗株式会社 (2013).

田中修「花と野菜のふしぎ解体新書（3）」園芸新知識「はなとやさい」Vol.68 No.3: 45-46. タキイ種苗株式会社 (2013).

田中修「花と野菜のふしぎ解体新書（4）」園芸新知識「はなとやさい」Vol.68 No.4: 47-48. タキイ種苗株式会社 (2013).

田中修「花と野菜のふしぎ解体新書（5）」園芸新知識「はなとやさい」Vol.68 No.5: 45-46. タキイ種苗株式会社 (2013).

田中修「花と野菜のふしぎ解体新書（6）」園芸新知識「はなとやさい」Vol.68 No.6: 45-46. タキイ種苗株式会社 (2013).

田中修「花と野菜のふしぎ解体新書（7）」園芸新知識「はなとやさい」Vol.68 No.7: 45-46. タキイ種苗株式会社 (2013).

田中修「花と野菜のふしぎ解体新書（8）」園芸新知識「はなとやさい」Vol.68 No.8: 45-46. タキイ種苗株式会社 (2013).

田中修「花と野菜のふしぎ解体新書（9）」園芸新知識「はなとやさい」Vol.68 No.9: 45-46. タキイ種苗株式会社 (2013).

田中修「花と野菜のふしぎ解体新書（10）」園芸新知識「はなとやさい」Vol.68 No.10: 45-46. タキイ種苗株式会社 (2013).

田中修「花と野菜のふしぎ解体新書（11）」園芸新知識「はなとやさい」Vol.68 No.11: 47-48. タキイ種苗株式会社 (2013).

田中修「花と野菜のふしぎ解体新書（12）」園芸新知識「はなとやさい」Vol.68 No.12: 45-46. タキイ種苗株式会社 (2013).

田中修「人間もまた、すごい！」読書人の雑誌「本」446: 40-42. 講談社 (2013).

Nakagawa, N., Kato, M., Takahashi, Y., Shimazaki, K., Tamura, K., Tokuji, Y., Kihara, A., Imai, H.: Degradation of long-chain base 1-phosphate (LCBP) in Arabidopsis: functional characterization of LCBP phosphatase involved in the dehydration stress response. J. Plant Res. 125: 439-449 (2012).

Imai, H., Hattori, H., Watanabe, M.: An improved method for the analysis of glucosylceramide species having cis-8 and trans-8 isomers of sphingoid bases by LC-MS/MS. Lipids 47: 1221-1229 (2012).

Imai, K. S., Daido, Y., Kusakabe, T. G., Satou, Y.: Cis-acting transcriptional repression establishes a sharp boundary in chordate embryos. Science 337: 964-967 (2012).

Kusakabe, T. G., Sakai, T., Aoyama, M., Kitajima, Y., Miyamoto, Y., Takigawa, T., Daido, Y., Fujiwara, K., Terashima, Y., Sugiuchi, Y., Matassi, G., Yagisawa, H., Park, M. K., Satake, H., Tsuda, M.: A conserved non-reproductive GnRH system in chordates. PLoS One 7: e41955 (2012).

Razy-Krajka, F., Brown, E. R., Horie, T., Callebert, J., Sasakura, Y., Joly, J.S. Kusakabe, T. G., Vernier, P.: Monoaminergic modulation of photoreception in ascidian: Evidence for a proto-hypothalamo-retinal territory. BMC Biology 10: 45 (2012).

Sakai, T., Aoyama, M., Kawada, T., Kusakabe, T., Tsuda, M., Satake, H.: Evidence for differential regulation of GnRH signaling via heterodimerization among GnRH receptor paralogs in the protochordate, Ciona intestinalis. Endocrinology 153: 1841-1849 (2012).

Nishitsuji, K., Horie, T., Ichinose, A., Sasakura, Y., Yasuo, H., Kusakabe, T. G.: Cell lineage and cis-regulation for a unique GABAergic/glycinergic neuron type in the larval nerve cord of the ascidian Ciona intestinalis. Dev. Growth Differ. 54: 177-186 (2012).

Kimata, T., Tanizawa, Y., Can, Y., Ikeda, S., Kuhara, A., Mori, I.: Synaptic polarity depends on phosphatidylinositol signaling regulated by myo-inositol monophosphatase in Caenorhabditis elegans. Genetics 191: 509-521 (2012).

Nishio, N., Mohri-Shiomi, A., Nishida, Y., Hiramatsu, N., Kodama-Namba, E., Kimura, K. D., Kuhara, A., Mori, I.:?A novel and conserved protein AHO-3 is required for thermotactic plasticity associated with feeding states in Caenorhabditis elegans.?Genes Cells 17: 365-386 (2012).

Sakaguchi, K., Matsuda, T., Kobayashi, T., Ohara, J., Hamaguchi, R., Abe, E., Nagano, N., Hayashi, M., Honda, D., Okita, Y., Taoka, Y., Sugimoto, S., Okino, N., Ito, M.: Versatile transformation system that is applicable to both multiple transgene expression and gene targeting for Thraustochytrids. Appl. Environ. Microbiol. 78: 3193-3202 (2012).

Matsuda, T., Sakaguchi, K., Hamaguchi, R., Kobayashi, T., Abe, E., Hama, Y., Hayashi, M., Honda, D., Okita, Y., Sugimoto, S., Okino, N., Ito, M.: Analysis of Δ12-fatty acid desaturase function revealed that two distinct pathways are active for the synthesis of PUFAs in T. aureum ATCC 34304. J. Lipid Res. 53: 1210-1222 (2012).

Matsuura, H., Nakazawa, A., Ueda, M., Honda, D., M. Watanabe, M. M., Kaya, K.: On the bio-rearrangement into fully saturated fatty acidscontaining triglyceride in Aurantiochytrium sp. Procedia Environmental Sciences 15: 66-72 (2012).

Nakazawa A, Matsuura H, Kose R, Kato S, Honda D, Inouye I, Kaya K, Watanabe MM.: Optimization of culture conditions of the thraustochytrid Aurantiochytrium sp. strain 18W-13a for squalene production. Bioresource Technology 109: 287-291 (2012).

Nakazawa, A., Matsuura, H., Kose, R., Ito, K., Ueda, M., Honda, D., Inouye, I., Kaya, K., Watanabe, M. M.: Optimization of biomass and fatty acid production by Aurantiochytrium sp. strain 4W-1b. Procedia Environmental Sciences 15: 27-33 (2012).

Mizuno, S., Nakazaki, Y., Yoshida, M., Watanabe, YH.: Orientation of the amino-terminal domain of ClpB affects the protein disaggregation. FEBS J. 279: 1474-1484 (2012).

Suno, R., Shimoyama, M., Abe, A., Shimamura, T., Shimodate, N., Watanabe, YH., Akiyama, Y., Yoshida, M.: Conformational transition of the lid helix covering the protease active site is essential for the ATP-dependent protease activity of FtsH. FEBS Lett. 586: 3117-3121 (2012).

『ウォルパート発生生物学』第６章　線虫，ウニ，ホヤの発生
日下部岳広．日下部りえ（共訳）、武田洋幸・田村宏治監訳、2012年
メディカル・サイエンス・インターナショナル.

Sasakura, Y., Sierro, N., Nakai, K., Inaba, K., and Kusakabe, T. G.: Genome Structure, Functional Genomics, and Proteomics in Ascidians. Genome Mapping and Genomics in Laboratory Animals: Genome Mapping and Genomics in Animals, Vol. 4 (Springer), pp. 87-132 (2012).

たねのふしぎ
田中修著　サイエンス・アイ新書　2012年 ソフトバンククリエイティブ.

都会の花と木―四季を彩る植物のはなし
田中修著　中公新書　2012年 中央公論新社.

『藻類ハンドブック』不等毛植物-ラビリンチュラ類，3-2-3 代表的なオイル産生藻類． 本多大輔（分担執筆）、渡邉信監修　2012年　エヌ・ティー・エス.

『進化学事典』4.7 クロミスタ，6.6 その他の菌類様原生生物．
本多大輔（分担執筆）、日本進化学会編　2012年　共立出版.

大西憲幸、久原篤: 線虫Caenorhabditis elegansの温度応答を制御する神経情報処理メカニズム. 比較生理生化学 29 (3): 112-120 (2012).

久原篤: 線虫の温度応答の分子生理メカニズム. 生物物理. 52 (4): 200-202 (2012).

今井博之・中川範子: 葉の水分蒸散を調節する方法、及び植物の耐乾燥性を向上させる方法. 特許公報 特許第5019282号

Watanabe, M., Miyagi, A., Nagano, M., Kawai-Yamada, M., Imai, H.: Characterization of glucosylceramides in the Polygonaceae, Rumex obtusifolius L. injurious weed. Biosci. Biotechnol. Biochem. 75: 877-881 (2011).

Watanabe, M., Imai, H.: Characterization of glucosylceramides in the leaves of the grass family (Poaceae): Pooideae has unsaturated hydroxy fatty acids. Biosci. Biotechnol. Biochem. 75: 1838-1841 (2011).

Okamura, K., Yamashita, R., Takimoto, N., Nishitsuji, K., Suzuki, Y., Kusakabe, T. G., Nakai, K.:Profiling ascidian promoters as the primordial type of vertebrate promoter. BMC Genomics 12 (Suppl. 3): S7 (2011).

Heeringa, S. F., Chernin, G., Chaki, M., Zhou, W., Sloan, A. J., Ji, Z., Xie, L. X., Salviati, L., Hurd, T. W., Vega-Warner, V., Killen, P. D., Raphael, Y., Ashraf, S., Ovunc, B., Schoeb, D. S., McLaughlin, H. M., Airik, R., Vlangos, C. N., Gbadegesin, R., Hinkes, B., Saisawat, P., Trevisson, E., Doimo, M., Casarin, A., Pertegato, V., Giorgi, G., Prokisch, H., R?tig, A., N?rnberg, G., Becker, C., Wang, S., Ozaltin, F., Topaloglu, R., Bakkaloglu, A., Bakkaloglu, S. A., M?ller, D., Beissert, A., Mir, S., Berdeli, A., Varpizen, S., Zenker, M., Matejas, V., Santos-Oca?a, C., Navas, P., Kusakabe, T., Kispert, A., Akman, S., Soliman, N. A., Krick, S., Mundel, P., Reiser, J., N?rnberg, P., Clarke, C. F., Wiggins, R. C., Faul, C., Hildebrandt, F.: COQ6 mutations in human patients produce nephrotic syndrome with sensorineural deafness. J. Clin. Invest. 121: 2013-2024 (2011).

Horie, T., Shinki, R., Ogura, Y., Kusakabe, T. G., Satoh, N., Sasakura, Y.: Ependymal cells of chordate larvae are stem-like cells that form the adult nervous system. Nature 469: 525-528 (2011).

Khare, P., Mortimer, S., Cleto, C., Okamura, K., Suzuki, Y., Kusakabe, T., Nakai, K., Meedel, T., Hastings, K.: Cross-validated methods for promoter/transcription start site mapping in SL trans-spliced genes, established using the Ciona intestinalis troponin I gene. Nucl. Acids Res. 39: 2638-2648 (2011).

Ohnishi N., Kuhara, A., Nakamura, F., Okochi, Y., Mori, I.: Bidirectional regulation of thermotaxis by glutamate transmissions in Caenorhabditis elegans. EMBO J. 30: 1376-1388 (2011).

Miyara, A., Ohta, A., Okochi, Y., Tsukada, Y., Kuhara, A., Mori, I.: Novel and conserved protein macoilin is required for diverse neuronal functions in Caenorhabditis elegans. PLoS Genetics 7: e1001384 (2011).

Kuhara, A., Ohnishi N., Shimowada T., Mori, I.: Neural coding in a single sensory neuron controlling opposite seeking behaviours in Caenorhadbitis elegants. Nature commun. 2: 355 (2011).

Kobayashi, T., Sakaguchi, K., Matsuda, T., Abe, E., Hama, Y., Hayashi, M., Honda, D., Okita, Y., Sugimoto, S., Okino, N., Ito, M.: Increase of eicosapentaenoic acid in thraustochytrids through thraustochytrid ubiquitin promoter-driven expression of a fatty acid Δ5 desaturase gene. Appl. Environ. Microbiol. 77: 3870-3876 (2011).

Kaya, K., Nakazawa, A., Matsuura, H., Honda, D., Watanabe, M. M.: Thraustochytrid Aurantiochytrium sp. 18W-13a accummulates high amounts of squalene. Biosci. Biotechnol. Biochem. 75: 2246-2248 (2011).

Nagano, N., Sakaguchi, K., Taoka, Y., Okita, Y., Honda, D., Ito, M., Hayashi, M.: Detection of genes involved in fatty acid elongation and desaturation in thraustochytrid marine eukaryotes. J. Oleo Sci. 60: 475-481 (2011).

Mukai, M., Kato, H., Hira, S., Nakamura, K., Kita, H., Kobayashi, S.: Innexin2 gap junctions in somatic support cells are required for cyst formation and for egg chamber formation in Drosophila. Mech. Dev. 128: 510-523 (2011).

Hamanaka, T., Michinomae, M., Seidou, M., Miura, K. Inoue, K., Kito, Y.: Luciferase activity of the intracellular microcrystal of the firefly squid, Watasenia scintillans. FEBS Lett. 585: 2735-2738.

Yamasaki, T., Nakazaki, Y., Yoshida, M., Watanabe, YH.: Roles of conserved arginines in ATP-binding domains of AAA+ chaperone ClpB from Thermus thermophilus. FEBS J. 278: 2395-2403 (2011).

『地球のふしぎ６５』ＮＨＫラジオセンター
田中修（分担執筆）「子ども科学電話相談」製作班・編 2011年 ＮＨＫ出版.

田中修: 花と緑の勉強室⑫. 「プランツ＆ガーデン」148: 21-25. 日本園芸協会 (2011).

田中修: 花と緑の勉強室⑬. 「プランツ＆ガーデン」149: 24-28. 日本園芸協会 (2011).

田中修: 花と緑の勉強室⑭. 「プランツ＆ガーデン」150: 22-26. 日本園芸協会 (2011).

田中修: 花と緑の勉強室⑮. 「プランツ＆ガーデン」151: 27-31. 日本園芸協会 (2011).

Islam, A. F. M. T., Moly, P. K., Miyamoto, Y., Kusakabe, T. G.: Distinctive expression patterns of Hedgehog pathway genes in the Ciona intestinalis larva: implications for a role of Hedgehog signaling in postembryonic development and chordate evolution. Zool. Sci. 27: 84-90 (2010).

Horie, T., Nakagawa, M., Sasakura, Y., Kusakabe, T. G., Tsuda, M.: Simple motor system of the ascidian larva: neuronal complex comprising putative cholinergic and GABAergic/glycinergic neurons. Zool. Sci. 27: 181-190 (2010).

Sakai, T., Aoyama, M., Kusakabe, T., Tsuda, M., Satake, H.: Functional diversity of signaling pathways through G protein-coupled receptor heterodimerization with a species-specific orphan receptor subtype. Mol. Biol. Evol. 27: 1097-1106 (2010).

O'Toole, J. F., Liu, Y., Davis, E. E., Westlake, C. J., Attanasio, M., Otto, E. A., Seelow, D., Nurnberg, G., Becker, C., Nuutinen, M., K?rpp?, M., Ignatius, J., Uusimaa, J., Pakanen, S., Jaakkola, E., van den Heuvel, L. P., Fehrenbach, H., Wiggins, R., Goyal, M., Zhou, W., Wolf, M. T., Wise, E., Helou, J., Allen, S. J., Murga-Zamalloa, C. A., Ashraf, S., Chaki, M., Heeringa, S., Chernin, G., Hoskins, B. E., Chaib, H., Gleeson, J., Kusakabe, T., Suzuki, T., Isaac, R. E., Quarmby, L. M., Tennant, B., Fujioka, H., Tuominen, H., Hassinen, I., Lohi, H., van Houten, J. L., Rotig, A., Sayer, J. A., Rolinski, B., Freisinger, P., Madhavan, S. M., Herzer, M., Madignier, F., Prokisch, H., Nurnberg, P., Jackson, P. K., Khanna, H., Katsanis, N., and Hildebrandt, F.: Individuals with mutations in XPNPEP3, which encodes a mitochondrial protein, develop a nephronophthisis-like nephropathy. J. Clin. Invest. 120: 791-802 (2010).

Tassy, O., Dauga, D., Daian, F., Sobral, D., Robin, F., Khoueiry, P., Salgado, D., Fox, V., Caillol, D., Schiappa, R., Laporte, B., Rios, A., Luxardi, G., Kusakabe, T., Joly, J.-S., Darras, S., Christiaen, L., Contensin, M., Auger, H., Lamy, C., Hudson, C., Rothb?cher, U., Gilchrist, M., Makabe, K. W., Hotta, K., Fujiwara, S., Satoh, N., Satou, Y., and Lemaire, P.: The ANISEED database: Digital representation, formalization, and elucidation of a chordate developmental program. Genome Res. 20: 1459-1468 (2010).

Shichijo, C., Ohuchi, H., Iwata, N., Nagatoshi, Y., Takahashi, M., Nakatani, E., Inoue, K., Turumi, S., Tanaka, O. Hashimoto, T.: Light exaggerates apical hook curvature through phytochrome actions in tomato seedlings. Planta 231: 665-675 (2010).

Okatani, A., Ikegami, T., Takahashi, W., Tanaka, O.: Induction and promotion of flowering by heat-treated catecholamines in Lemna paucicostata. Biosci. Biotechnol. Biochem. 74: 2339-2341 (2010).

Sugahara, M., Minamoto, T., Fuchikawa, T., Michinomae, M. Shimizu, I.: Apis cerana japonica discriminates between floral color phases of an oriental orchid, Cymbidiume floribundum. Zool. Sci. 27, 901-906 (2010).

向正則, 本多皓子, 味村夏芽, 今井博之，本多大輔，小林悟: ショウジョウバエ始原生殖細胞中におけるRpL-22 like遺伝子の発現様式. 甲南大学紀要 57 (1): 17-28 (2010).

『自然と環境のふしぎ』ＮＨＫラジオセンター
田中修（分担執筆）「子ども科学電話相談」製作班・編 2010年 ＮＨＫ出版.

『生物の事典』植物の花芽形成
田中修（分担執筆）、2010年 朝倉書店.

『新しいエネルギー　藻類バイオマス』Aurantiochytrium limacinum
本多大輔（分担執筆）、渡邉信編 2010年 医学評論社.

Nagano, M., Ihara-Ohori, Y., Imai, H., Inada, N., Fujimoto, M., Tsutsumi, N., Uchimiya, H., and Kawai-Yamada, M.: Functional association of cell death suppressor, Arabidopsis Bax inhibitor-1, with fatty acid 2-hydroxylation through cytochrome b. Plant J. 58: 122-134 (2009).

Minamioka, H. and Imai, H.: Sphingoid long-chain base composition of glucosylceramides in Fabaceae: a phylogenetic interpretation of Fabeae. J. Plant Res. 122: 415-419 (2009).

Dong, B., Horie, T., Denker, E., Kusakabe, T., Tsuda, M., Smith, W. C., Jiang, D.: Tube formation by complex cellular processes in Ciona intestinalis notochord. Dev. Biol. 330: 237-249 (2009).

Kusakabe, T. G., Takimoto, N., Jin, M., Tsuda, M.: Evolution and the origin of the visual retinoid cycle in vertebrates. Phil. Trans. R. Soc. Lond. B 364: 2897-2910 (2009).

Horie, T., Sasakura, Y., Nakagawa, M., and Kusakabe, T. G.: Cell type and function of neurons in the ascidian nervous system. Dev. Growth Differ. 51: 207-220 (2009).

Ito, Y., Sonobe, H.: The role of ecdysteroid 22-kinase in the accumulation of ecdysteroids in ovary of silkworm Bombyx mori. Ann. N. Y. Acad. Sci. 1163: 421-424 (2009).

Sonobe, H., Ito, Y.: Phosphoconjugation and dephosphorylation reactions of steroid hormone in insects. Mol. Cell. Endocrinol. 307: 25-35 (2009).

Endo, J., Takahashi, W., Ikegami, T., Beppu, T., Tanaka, O.: Induction of flowering by inducers of systemic acquired resistance in the Lemna Plant. Biosci. Biotechnol. Biochem. 73: 183-185 (2009).

Tsui, C. K. M., Marshall, W., Yokoyama, R., Honda, D., Lippmeier, J. C., Craven, K. D., Peterson, P. D., Berbee, M. L.: Labyrinthulomycetes phylogeny and its implications for the evolutionary loss of chloroplasts and gain of ectoplasmic gliding. Mol. Phylogenet. Evol. 50: 129-140 (2009).

Sekimoto, S., Klochkova, T. A., West, J. A., Beakes, G. W., Honda, D.: Olpidiopsis bostrychiae sp. nov.: an endoparasitic oomycetes that infects Bostrychia and other red algae (Rhodophyta). Phycologia 48: 460-472 (2009).

Nagano, N., Taoka, Y., Honda, D., Hayashi, M.: Optimization of culture conditions for growth and docosahexaenoic acid production by a marine thraustochytrid, Aurantiochytrium limacinum mh0186. J. Oleo Sci. 58: 623-628 (2009).

Watanabe, Y. H., Nakazaki, Y., Suno, R., Yoshida, M.: Stability of the two wings of the coiled-coil domain of ClpB chaperone is critical for its disaggregation activity. Biochem. J. 421: 71-77 (2009)

Mizutani, T., Nemoto, S., Yoshida, M., Watanabe, Y. H.: Temperature-dependent regulation of Thermus thermophilus DnaK/DnaJ chaperones by DafA protein. Genes to Cells 14: 1405-1413 (2009).

『ベーシックマスター植物生理学』第９章　糖と脂質の代謝
今井博之（分担執筆）、塩井祐三・井上弘・近藤矩朗編 2009年 オーム社.

『さまざまな神経系をもつ動物たち：神経系の比較生物学（動物の多様な生き方５）』 日下部岳広（分担執筆）、日本比較生理生化学会編　2009年 共立出版.

『身近な動物を使った実験１　ホヤ　メダカ・ゼブラフィッシュ　キンギョ　カエル』 日下部岳広（分担執筆）、鈴木範男監修 2009年 三共出版.

都会の花と木
田中修著　中公新書2009年 中央公論新社.

花のふしぎ１００
田中修著　サイエンス・アイ新書 2009年 ソフトバンククリエイティブ.

『いのちはふしぎがいっぱいだ』 ＮＨＫラジオセンター
田中修（分担執筆）、「子ども科学電話相談」製作班・編 2009年 ＮＨＫ出版.

本多大輔，川村嘉応，有賀祐勝: ミニシンポジウム「ノリ病気研究の現状と展望」はじめに. 日本水産学会誌 75: 907 (2009).

本多大輔: 壺状菌の分類と漁場における探索. 日本水産学会誌 75: 908-909 (2009).

川村嘉応，本多大輔，有賀祐勝: 特集 「ノリの病気」によせて. 海洋と生物 31: 599-600 (2009).

関本訓士，横尾一成，川村嘉応，本多大輔: 壺状菌の系統と分類. 海洋と生物 31: 601-604 (2009).

本多大輔，関本訓士，小林未佳，横尾一成，藤武史行，川村嘉応: 壺状菌の早期検出法. 海洋と生物 31: 605-610 (2009).

道之前允直，石川正樹，鬼頭勇次: ホタルイカと光 ?ホタルイカの身投げ?．海洋と生物 31 (3): 280-286 (2009).

渡辺洋平: リング状ATPaseの新しい反応モデル‐しゃくとり虫の動きでDNAを取り込む？ 蛋白質核酸酵素 54 : 763 (2009).

Furune, T., Hashimoto, K., Ishiguro, J.: Characterization of a fission yeast P5-type ATPase homologue that is essential for Ca2+/Mn2+ homeostasis in the absence of P2-type ATPases. Genes Genet. Syst. 83: 373-381 (2008).

Nishikawa M, Hosokawa K, Ishiguro M, Minamioka H, Tamura K, Hara-Nishimura I, Takahashi Y, Shimazaki K, Imai H.: Degradation of sphingoid long-chain base 1-phosphates (LCB-1Ps): functional characterization and expression of AtDPL1 encoding LCB-1P lyase involved in the dehydration stress response in Arabidopsis. Plant Cell Physiol. 49: 1758-1763 (2008).

Yokoyama, M., Yamaguchi, S., Suzuki, M., Tanaka, O., Kobayashi, K., Yanaki, T., Watanabe, N.: Identification of reaction products of 9-hydroxy-10-oxo-12(Z),15(Z)-octadecadienoic acid (KODA) and norepinephrine that strongly induceflowering in Lemna. Plant Biotechnology 25: 547 -551 (2008).

Maeda, S., Nakashima, A., Yamada, R., Hara, N., Fujimoto, Y., Ito, Y., Sonobe, H.: Molecular cloning of ecdysone 20-hydroxylase and expression pattern of the enzyme during embryonic development of silkworm Bombyx mori. Comp. Biochem. Physiol. B. 149(3): 507-516 (2008).

Ito, Y., Yasuda, A., Sonobe, H.: Synthesis and phosphorylation of ecdysteroids in　ovary of silkworm, Bombyx mori. Zool. Sci. 25(7): 721-727 (2008).

Shimai, K., Hirano, A., Kitaura, Y., Kitano, Y., Itoh, A., Kiuchi, A., Sasaki, N., Nishikata, T.: Novel ubiquitous promoters and expression-vector optimization in ascidian embryos. Invertebr. Reprod. Develop. 51: 103-110 (2008).

Multimodal pathways during UVB-induced apoptosis in HL-60. Kiuchi, A., Sasaki, N., Seki, R., and Nishikata, T.: Proceedings of the 14th Biennial Congress of the International Society for Free Radical Research -SFRR 99-102 (2008).

Ohki, K., Kamiya, M., Honda, D., Kumazawa, S., Ho, K. K.: Morphological and phylogenetic studies on unicellular diazotrophic cyanobacterira (cyanophytes) isolated from the coastal water around Singapore. Journal of Phycology 44: 142-151 (2008).

Sekimoto, S., Beakes, G, W., Gachon, C. M. M., Muller, D. G., Kupper, F. C., Honda, D.: The development, ultrastructural cytology, and molecular phylogeny of the basal oomycete Eurychasma dicksonii, infecting the filamentous phaeophyte algae Ectocarpus siliculosus and Pylaiella littoralis. Protist 159: 299-318 (2008).

Sekimoto, S., Yokoo, K., Kawamura, Y., Honda, D.: Taxonomy, molecular phylogeny, and ultrastructural morphology of Olpidiopsis porphyrae sp. nov. (Oomycetes, stramenopiles), a unicellular obligate endoparasite of Bangia and Porphyra spp. (Bangiales, Rhodophyra). Mycological Research 112: 361-374 (2008).

Kumon, Y., Kamisaka, Y., Tomita, N., Kimura, K., Uemura, H., Yokochi, T., Yokoyama, R., Honda, D.: Isolation and Characterization of a ・-Desaturase from Oblongichytrium sp. Biosci. Biotech. Biochem. 72: 2224-2227 (2008).

Yatsu, J., Hayashi, M., Mukai, M., Arita, K., Shigenobu, S. and S. Kobayashi: Maternal RNAs encoding transcription factors required for germline-specific gene expression in Drosophila embryos. Int. J. Dev. Biol. 52: 913-923 (2008).

恐竜は虹色だったか？　---たけしの「最新科学教室」---
ビートたけし・橋本周司・田中修・上田恵介・村松照男・海部宣男・中込弥男・船山信次・富田幸光・吉村仁・有田正光 ：2008年 新潮社.

葉っぱのふしぎ　　---緑に秘められたしくみと働き---
田中修著　2008 年：（2008年4月24日発行） ソフトバンククリエイティブ.

『花と緑のふしぎ』ＡＢＣラジオ「おはようパーソナリティ道上洋三です」
田中修監修、神戸新聞総合出版センター編　2008年

『科学おもしろＱ＆Ａ』ＮＨＫラジオセンター
田中修（分担執筆）、「子ども科学電話相談」製作班編　ＮＨＫ出版 (2008).

『ベーシックマスター生化学』第７章 低分子生理活性物質と金属イオン
渡辺洋平（分担執筆）、大山隆監修、西川一八・清水光弘編 (2008) オーム社

Takahashi, W., Tanaka, O.: Whiskers-Mediated Transformation: the Simplest Method for Direct Gene Transfer in Higher Plants. "Advances in Plant Biotechnology" Edited by Dr. G P Rao, Dr.Yipeng Zhao, V V Radchuk and S K Bhatnagar, M/s. Studium Press LLC, USA pp.63-80 (2008).

田中修: 植物ホルモンの元祖“オーキシン”. プランツ＆ガーデン. 136: 51-54 (2008).

田中修: 植物は感じて動く---花が開くしくみ---. 生物の科学 遺伝. 62(2):84-85 (2008).

園部治之，伊藤洋一: ステロイドホルモンの新しい活性調節系：エクジステロイドのリン酸化と脱リン酸化による活性調節とその生理的意義. 比較内分泌学 34(129): 54-69 (2008).

渡辺洋平: Ｃｌｐプロテアーゼ．蛋白質核酸酵素 増刊号「キーワード：蛋白質の一生」、53 (8): 1035-1036 (2008).

渡辺洋平: ＤｎａＪ．蛋白質核酸酵素 増刊号「キーワード：蛋白質の一生」、53 (8): 1040 (2008).

渡辺洋平: ＤｎａＫ．蛋白質核酸酵素 増刊号「キーワード：蛋白質の一生」、53 (8): 1042 (2008).

渡辺洋平: ＧｒｐＥ．蛋白質核酸酵素 増刊号「キーワード：蛋白質の一生」、53 (8): 1057 (2008).

Kitaura, Y., Sonobe, H., Tanaka, O., Honda, D., Watanabe, Y., Makabe, K. W., Takamura, K., and Nishikata, T. Neural-tube specific paralogous genes and their upstream regulatory sequences. Mem. Konan Univ., Sci. Eng. Ser. 54, 75-88 (2007).

Sumida N, Sonobe H, Ohyama T Chromatin structure formed on a eukaryotic promoter activated by a left-handed superhelical bent DNA of 180 bp. J Adv. Sci. 19(1,2), 22-28 (2007).

Hosoi-Tanabe, S., Honda, D., Fukaya, S. Otake, I., Inagaki, Y., Sako, Y. Proposal of Pseudochattonella verruculosa gen. nov., comb. nov. (Dictyochophyceae) for a formar raphidophycean alga Chattonella verruculosa, based on 18S rDNA phylogeny and ultrastructural characteristics. Phycological Research 55: 185-192 (2007).

Yokoyama, R., Honda, D. Taxonomic rearrangement of the genus Schizochytrium sensu lato based on morphology, chemotaxonomical characteristics and 18S rRNA gene phylogeny (Thraustochytriaceae, Labyrinthulomycetes): emendation for Schizochytrium and erection of Aurantiochytrium and Oblongichytrium gen. nov. Mycoscience 48: 199-211 (2007).

Sekimoto, S., Hatai, K., Honda, D. Molecular phylogeny of an unidentified Haliphthoros-like marine oomycete and Haliphthoros milfordensis inferred from nuclear-encoded small and large subunit rRNA genes and mitochondrial-encoded cox2 gene. Mycoscience 48: 212-221 (2007).

Takao, Y., Tomaru, Y., Nagasaki, K., Sasakura, Y., Yokoyama, R., Honda, D. Fluorescence in situ hybridization using 18S rRNA-targeted probe for specific detection of thraustochytrids (Labyrinthulomycetes). Plankton &Benthos Research 2: 91-97 (2007).

Yokoyama, R., Salleh, B., Honda, D. Taxonomic rearrangement of the genus Ulkenia sensu lato phylogeny based on morphology, chemotaxonomical characteristics and 18S rRNA gene (Thraustochytriaceae, Labyrinthulomycetes): emendation for Ulkenia and erection of Botryochytrium, Parietichytrium and Sicyoichytrium gen. nov. Mycoscience 48: 329-341 (2007).

Honda, D. Shono, T., Kimura. K., Fujita, S., Iseki, M., Makino, Y., Murakami, A. Homologs of the sexually induced gene 1 (sig1) product constitute the stramenopile mastigonemes. Protist 158: 77-88 (2007).

Takao, Y., Nagasaki, K., Honda, D. Squashed ball-like dsDNA virus infecting a marine fungoid protist Sicyoidochytrium minutum (Thraustochytriaceae, Labyrinthulomycetes). Aquatic Microbial Ecology 49: 101-108 (2007).

M. Mukai, Y. Hayashi, Y. Kitadate, S. Shigenobu, K. Arita, S. Kobayashi, MAMO, a maternal BTB/POZ-Zn-finger protein enriched in germline progenitors is required for the production of functional eggs in Drosophila. Mech. Dev. 124, 570-583 (2007).

K. Sato, Y. Hayashi, Y., Ninomiya, S. Shigenobu, K.Arita, M. Mukai, S. Kobayashi, Maternal Nanos represses hid/skl-dependent apoptosis to maintain the germ line in Drosophila embryos. Proc. Natl. Acad. Sci. 104, 7455-7460 (2007).

園部治之：脱皮ホルモン（概説），in「ホルモンハンドブック新訂eBook版」，日本比較内分泌学会編，pp.2031-2047 （2007）.

園部治之，藤原晴彦：エクジソンと20-ヒドロキシエクジソン，in「ホルモンハンドブック新訂eBook版」，日本比較内分泌学会編，pp.2048-2080 （2007）.

中川好秋，園部治之：脱皮ホルモン類縁体，in「ホルモンハンドブック新訂eBook版」，日本比較内分泌学会編，pp.2081-2098 （2007）.

田中修 単著　２００７「入門　たのしい植物学」ブルーバックス　講談社..

田中修 単著　２００７「雑草のはなし」　中公新書.

西川正洋、石黒麻衣、南岡宏樹、細川謙太、今井博之　シロイヌナズナS1Pリアーゼの機能解析、脂質生化学研究、日本脂質生化学会、pp. 48-50 (2007).

4. 伊藤洋一，中島明日香，園部治之：エクジステロイドのリン酸化と脱リン酸化，日本比較内分泌学会ニュース，122，17-23 (2007).

田中修 植物たちは寒さに耐えるだけではない　　プランツ＆ガーデン　132号 36-40 (2007).　

田中修 暑い日差しの下で暮らす植物の工夫　　プランツ＆ガーデン　133号 34-38 (2007).　

田中修 日本人が発見した植物ホルモン“ジベレリン”　プランツ＆ガーデン　134号 53-56 (2007).

田中修 不思議な気体 “エチレン”　プランツ＆ガーデン　135号 34-37　(2007).　

向正則、小林悟　ショウジョウバエの母性因子SVA53による減数分裂過程の染色体構造制御　生物の科学　遺伝　別冊　No. 21 pp.47-51 (2007).

本多大輔，高尾祥丈，長崎慶三　「ラビリンチュラ類を宿主とするウイルス，並びにラビリンチュラ類の増殖制御法及び遺伝子操作法」　　特許 第4031633号　(2007年　登録).

Nishikata, T., Kiuchi, A., Kuribayashi, M., and Sasaki, N. UV-irradiated cells as a screening system for the antioxidants. Proceedings of the 13th Biennial Congress of the International Society for Free Radical Research -SFRR, 253-256 (2006).

Shirae-Kurabayashi, M., Nishikata, T., Takamura, K., Tanaka, K. J., Nakamoto, C., and Nakamura, A. Dynamic redistribution of vasa homolog and exclusion of somatic cell determinants during germ cell specification in Ciona intestinalis. Development 133, 2683-2693 (2006).

Masahiro Hamada, Ikumi Ohata, Ken-ichi Fujita, Yoshinosuke Usuki, Akira Ogita, Junpei Ishiguro and Toshio Tanaka. Inhibitory activity of 1-farnesylpyridinium on the spatial control over the assembly of cell wall polysaccharides in Schizosaccharomyces pombe. J. Biochem. 140: 851-859 (2006).

Sonobe H, Ohira T, Ieki K, Maeda S, Ito Y, Ajimura M, Mita K, Matsumoto H, Wilder N M Purification, kinetic characterization, and molecular cloning of a novel enzyme, ecdysteroid 22-kinase. J. Biol. Chem. 281(40), 29513-29524 (2006).

Nakatsuji T, Sonobe H, Watson D R Molt-inhibiting hormone-mediated regulation of ecdysteroid synthesis in Y-organs of the crayfish (Procambarus clarkii): Involvement of cyclic GMP and cyclic nucleotide phosphodiesterase. Mol. Cell. Endocrinol. 253(1-2), 76-82 (2006).

Simida N, Nishikawa J, Kishi H, Amano M, Furuya T, Sonobe H, Ohyama T A designed curved DNA segment that is a remarkable activator of eukaryotic transcription. FEBS J. 273(24), 5691-5702 (2006).

Mizoguchi,M., Kitano,S., Takahashi,W., Sugawara,F. and Tanaka,O. Isolation of protoplast from aerial mycelia and fruit-body formation from regenerated mycelia in Pleurotus cornucopiae. Biosci. Biotechnol. Biochemi. 70:2751-2753. (2006).

Takao Y, Mise K, Nagasaki K, Okuno T, Honda D. Complete nucleotide sequence and genome organization of a single-stranded RNA virus infecting the marine fungoid protist Schizochytrium sp. J Gen Virol. 87: 723-733 (2006).

Yuasa T. Takahashi O, Dolven J K, Mayama S, Matsuoka A, Honda D, Bjorklund. Phylogenetic position of the small solitary phaeodarians (Radiolaria) based on 18S rDNA sequences by single cell PCR analysis. Marine Micropalentology 59: 104-114 (2006).

Shirai Y, Takao Y, Mizumoto H, Tomaru Y, Honda D, Nagasaki K. Genomic and phylogenetic analysis of a single-stranded RNA virus infecting Rhizosolenia setigera (Stramenopiles: Bacillariophyceae). J. Mar. Biol. Ass. U. K. 86: 1-9 (2006).

Kumon Y, Yokoyama R, Haque Z, Yokochi T, Honda D, Nakahara T. A new labyrinthulid isolate that produces only Docosahexaenoic acid. Marine Biotechnology 8: 170-177 (2006).

M. Mukai, Y. Kitadate, K. Arita, S. Shigenobu, S. Kobayashi, Expression of meiotic genes in the germline progenitors of Drosophila embryos. Gene Exp. Pat. 6, 256-266 (2006).

田中修 分担執筆　栃内新、左巻健男編著「新しい高校生物の教科書」ブルーバックス　講談社　(2006).

田中修 分担執筆　「左右／みぎひだり」　別冊國文學　学燈社 (2006).

田中修　分担執筆　斧谷彌守一編 『花の命・人の命―土と空が育む―』　人文書院 (2006).

Shichijo,C., Tanaka,O. and Hashimoto,T. Photoregulation of seed germination. Handbook of Seed Science and Technology pp.343-366. Food Product Press. New York (2006).

本多大輔　「ＩＩ-5　偽菌類など (3), (4)」「ＩＩＩ-2 その他の原生生物 (2)」　微生物の世界　宮道慎二 奥田徹 井上勲 後藤俊幸 他編，丸善，136-137, 172 (2006).

新開綾子、西村由布子、田中修 ウキクサの遺伝子組換え体について　水草研究会誌 85号　16-24　(2006).

新開綾子、田中修 水草のプロトプラスト迅速単離法の改良　水草研究会誌 85号　25-30　(2006).

田中修 植物は季節の訪れを予知する　　プランツ＆ガーデン　129号 36-39　(2006).

田中修 植物が生殖に凝らす工夫　　プランツ＆ガーデン　130号 54-57　(2006).

田中修 光の色を見分ける植物の光感覚　　プランツ＆ガーデン　131号 54-58　(2006).

園部治之，他５名 「エクジステロイド 22-リン酸化酵素とその遺伝子」　　特願2006-2132号　 (2006年　出願).

今井博之、中川範子「葉の水分蒸散を調節する方法、及び植物の耐乾燥性を向上させる方法」 特願2006-248762号　（2006年　出願）.

Tatsuo Ohmichi, Masayasu Kuwahara, Naoko Sasaki, Masatoshi Hasegawa, Takahito Nishikata, Hiroaki Sawai, and Naoki Sugimoto Nucleic acid with guanidinum modification exhibits efficient cellular uptake Angew. Chem. Int. Ed. Engl. 44(41): 6682-6685 (2005).

Juan Carlos G. Cortes, Elena Carnero, Junpei Ishiguro, Yolanda Sanchez, Angel Duran, and Juan Carlos RIbas. The novel (1,3)β-D-glucan synthase catalytic subunit Bgs4p from fission yeast is essential during cytokinesis and polarized growth. J. Cell Sci. 118: 157-174 (2005).

Yamada R, Yamahama Y, Sonobe H Release of ecdysteroid-phosphates from egg yolk granules and their dephosphorylation during early embryonic development in silkworm, Bombyx mori. Zool. Sci. 22(2), 187-198 (2005).

Ohira T, Katayama H, Tominaga S, Takasuka T, Nakatsuji T, Sonobe H, Aida K, and Nagasawa H. Cloning and characterization of a molt-inhibiting hormone-like peptide from the prawn Marsupenaeus japonicus. Peptides, 26(2), 359-68 (2005).

佐野昌典、菅原冬樹、田中修。 ガラスビーズ培地によるきのこ栽培 日本きのこ学会誌　Vol.13 No.1:13-20. (2005).

Mizuno, K., Beppu,T., Shimada, T. and Tanaka, O. Aluminum borate whisker-mediated production of transgenic tobacco plants. Plant Cell. Tissue and Organ Culture. 80:163-169 (2005).

Okabe, T., Futatsuya, C., Tanaka, O. and Ohyama, T. Structural analysis of the gene encoding Drosera adelae S-like ribonuclease DA-1. Journal of Advanced Science. 17:218-224 (2005).

H. Imai and H. Nishiura, Phosphorylation of sphingoid long-chain bases in Arabidopsis: functional characterization and expression of the first sphingoid long-chain base kinase gene in plants. Plant Cell Physiol. 46: 375-380 (2005).

Yoshitake Takao, Keizo Nagasaki, Kazuyuki Mise, Tetsuro Okuno, Daiske Honda. Isolation and characterization of a novel single-stranded RNA virus (SssRNAV) infectious to a marine fungoid protist Schizochytrium sp. (Thraustochytriaceae, Labyrinthulae). Applied and Environmental Microbiology 71: 4516-4522 (2005).

Yuasa T, Takahashi O, Honda D, Mayama S. Phylogenetic analyses of the polycystine Radiolaria based on the 18S rDNA sequences of the Spumellariada and Nessellarida. Eur. J. Protistol. 41: 287-298 (2005).

横尾一成，関本訓士，川村嘉応，本多大輔．養殖ノリに被害を与える壺状菌Olpidiopsis sp.（卵菌綱，クロミスタ界）のPCRによる早期検出．日本水産学会誌71，917-922 (2005).

Watanabe, YH., Takano, M., Yoshida, M. ATP-binding to NBD1 of the ClpB chaperone induces motion of the long coiled-coil, stabilizes the hexamer and activates NBD2. J. Biol. Chem., 280, 24562-24567 (2005).

西方敬人，真壁和裕　　超実践バイオ実験イラストレイテッド　レッスン１　キットも活用遺伝子実験
秀潤社 (総ページ数188ページ; 2005.12.15).

田中修 単著　「クイズ　植物入門」　ブルーバックス　講談社 (2005).

田中修 分担執筆　「蔵出し生物実験」　裳華房 (2005).

園部治之，山田良一 昆虫の胚発生におけるエクジステロイドの役割：母性エクジステロイドが胚発生を調節する仕組み．化学と生物，43(3), 142 - 144 (2005).

田中修 秋に、あちこちで、サクラの花が咲くか．読書人の雑誌「本」講談社　5月号　PP.31-33　(2005).　

田中修　もやしの感性．　きんか（近畿化学工業会）　5月号　PP.4-7　(2005).

田中修　この野菜は何か？　やさい畑（家の光協会）　春準備号　P.43. p.51　(2005).　

新開綾子、中村瞳、田中修、別府敏夫 水草のプロトプラスト大量迅速単離法　水草研究会誌 82号 29-35　(2005).

渡辺洋平、吉田賢右 「Clp、プロテアソームの孔」 実験医学増刊号, Vol.23, No.15, 2302-2307 (2005).

今井博之、西川正洋「葉の水分蒸散を調節させる方法、及び植物の耐乾燥性を向上させる方法」 特願2005-234607号　（2005年　出願）.

Tanaka, K. J., Matsumoto, K., Tsujimoto, M., and Nishikata, T. CiYB1 is a major component of storage mRNPs in ascidian oocytes: Implications in mRNA localization and translational regulation. Developmental Biology, 272, 217-230 (2004).

Shoguchi, E., Ikuta, T., Yoshizaki, F., Satou, Y., Satoh, N., Asano, K., Saiga, H. and Nishikata, T. Fluorescent in situ hybridization to ascidian chromosomes. Zoological Science 21, 153-157 (2004).

Juan Carlos G. Cortes, Reiko Katoh-Fukui, Kanako Moto, Juan Carlos Ribas, and Junpei Ishiguro. Schizosaccharomyces pombe Pmr1p is essential for cell wall integrity and is required for polarized cell growth and cytokinesis. Eukaryotic Cell 3: 1124-1135 (2004).

Nakatsuji T, and Sonobe H Regulation of ecdysteroid secretion from the Y-organ by molt-inhibiting hormone in the American crayfish, Procambarus clarkii. Gen Comp. Endocrinol. 135(1), 358-364 (2004).

Sonobe H. and Yamada R. Ecdysteroids during early embryonic development in silkworm Bombyx mori: Metabolism and functions. Zool. Sci. 21(5), 503-516 (2004).

Mizuno, K.,Takahashi, W.,Oyama, T., Shimada, T. and Tanaka, O. Improvement of the aluminum borate whisker-mediated of DNA delivery into rice callus. Plant Production Science. 7:45-49. (2004).

Takahashi, W., Sugawara, F., Yamamoto, N., Bando, E., Matushita, J. and Tanaka, O. Plant regeneration in Actinidia polygama Miq. by leaf, stem, and petiole culture with zeatin, and from stem-derived calli on low-sucrose medium. J For Res 9:85-88. (2004).

Kawagishi,H., Hamajima,K., Takanami,R., Nakamura,T., Sato,Y., Akiyama, Y., Sano,M. and Tanaka, O. Growth promotion of mycelia of the matsutake mushhroom Tricholoma matsutake by D-isoleucine. Biosci. Biotechnol. Biochem. 68:2405-2407. (2004).

菅原冬樹、藤田拓也、田中修　 きのこ子実体原基形成のメカニズム　化学と生物　42(12):778-780. (2004).

H. Imai, M. Kinoshita and M. Ohnishi, Chemical characterization of glycerolipids and cerebrosides in a halophytic plant, Salicornia europaea L. J. Oleo. Sci. 53: 337-341 (2004).

Osamu Takahashi, Tomoko Yuasa, Daiske Honda, Shigeki Mayama. Molecular phylogeny of solitary shell-bearing Polycystinea (Radiolaria). Revue de Micropaleontologie 47 (3): 111-118 (2004).

Watanabe, YH. and Yoshida, M. Trigonal DnaK-DnaJ complex versus free DnaK and DnaJ: heat stress converts the former to the latter, and only the latter can do disaggregation in cooperation with ClpB. J. Biol. Chem., 279, 15723-15727 (2004).

S. Unezaki, M. Nishizawa, E. Okuda-Ashitaka, Y. Masu, M. Mukai, S. Kobayashi, K. Sawamoto, H. Okano, S. Ito, Characterization of the isoforms of MOVO zinc finger protein, a mouse homologue of Drosophila Ovo, as transcription factors. Gene 336, 47-58 (2004).

Sonobe, H., Atsuta, K., Fujimoto, Y., Fujiwara, H., Honda, D., Makka, T., Nagasawa, H., Nishikata, T., Ohyama, T., Tomita, S. A role of Ecdysteroid-phosphates during early embryonic development in silkworm Bombyx mori. Mem. Konan Univ., Sci. Ser. 51, 1-16 (2004).

菅原冬樹、藤田拓也、田中修 きのこ子実体原基形成のメカニズム　化学と生物　42(12):778-780　(2004).

本多大輔，関本訓士　　壺状菌の早期検出技術の開発． 海苔タイムス（全海苔漁連発行） 1781号 2-3 (2004).

本多大輔　　新たな生物材料：ラビリンチュラ類． バイオミディア（生物工学会誌）82巻7号311ページ (2004).

渡辺洋平、吉田賢右 「凝集タンパク質を再生するClpB」 蛋白質核酸酵素２００４年５月号増刊, Vol.49, No.7, 1059-1061 (2004).

Yamada R. and Sonobe H. Purification, kinetic characterization and molecular cloning of a novel enzyme ecdysteroid-phosphate phosphatase. J. Biol. Chem. 278(29), 26365-26373 (2003).

Nakatsuji T, and Sonobe H. Measurement of molt-inhibiting hormone titer in hemolymph of the American crayfish, Procambarus clarkii, by time-resolved floroimmunoassay. Zool. Sci. 20, 999-1001 (2003).

Okumura T, Kamba M, Sonobe H, Aida K. In vitro secretion of ecdysteroid by Y-organ during molt cycle and evidence for secretion of 3-dehydroecdysone in the giant freshwater prawn, Macrobrachium rosenbergii (Crustacea: Decapoda: Caridea). Invert. Reprod. Develop. 44(1), 1-8 (2003).

平井源一、稲村達也、奥村俊勝、芦田馨、田中修、中條博良、平野高司。 水稲と陸稲の形態と生理に及ぼす大気湿度の影響 日本作物学会紀事(Jpn. J. Crop Sci) 72:196-202 (2003).

平井源一、小倉聡、奥村俊勝、芦田馨、稲村達也、中條博良、田中修。 大気湿度が日本型水稲、陸稲及びインド型水稲の生育と気孔に及ぼす影響。 近畿作育研究(Rep. Soc. Crop Sci. Breed., Kinki) 48:25-29 (2003).

H. Imai, M. Ohnishi, and S. Ito, The chemical composition of membrane lipids in acclimation to chilling of squash (Cucurbita moschata Duch. cv Shirogikuza) seedling.　Mem. Konan Univ. Sci. Eng. Ser. 50: 27-39 (2003).

Jianzhong Huang, Tsunehiro Aki, Toshihiro Yokochi, Toro Nakahara, Daiske Honda, Seiji Kawamoto, Seiko Shigeta, Kazuhisa Ono, and Osamu Suzuki. Grouping newly isolated docosahexaenoic acid-producing thraustochytrids based on their polyunsaturated fatty acid profiles and comparative analysis of 18S rRNA genes. Marine Biotechnology 5: 450-457 (2003).

Yasuyuki Kumon, Rinka Yokoyama, Toshihiro Yokochi, Daiske Honda, Toro Nakahara. A new labyrinthulid isolate, which solely produces n-6 docosapentaenoic acid. Applied Microbiology and Biotechnology 63: 22-28 (2003).

Lee, S., Sowa, ME., Watanabe, YH., Sigler, PB., Chiu, W., Yoshida, M., Tsai, FT. The structure of ClpB: a molecular chaperone that rescues proteins from an aggregated state. Cell, 115, 229-240 (2003).

田中修 単著　 「ふしぎの植物学」　中公新書　中央公論新社　(2003).

今井博之「スフィンゴ脂質」光合成事典、日本光合成研究会編、p190 学会出版センター（2003）.

本多大輔　　ラビリンツラ類．地球環境調査計測事典（第３巻）沿岸域編．pp. 336-342　フジ・テクノシステム　（2003）.

村田未果，山形真之介，増井禎夫，園部治之 オオミジンコの性決定と生殖様式の転換機構の内分泌学的アプローチ，日本比較内分泌学会ニュース，111, 4-10 (2003).

本多大輔，関本訓士，川村嘉応，横尾一成　「海苔壷状菌病病原菌検出・定量方法」 特開2005-168359号　（2003年　出願）.